PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005872
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 348aa    MW: 38692.8 Da    PI: 10.1957
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005872genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31282339359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK+vkgs++pr+YY+Cts  +Cp++kkver+ e+p++++itYe+eHnh+
  DCAR_005872 282 DEYSWRKYGQKPVKGSPHPRAYYKCTSMrNCPARKKVERCLEEPSMLTITYENEHNHP 339
                  9*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.7E-12241277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.2E-32271340IPR003657WRKY domain
PROSITE profilePS5081126.659275341IPR003657WRKY domain
SuperFamilySSF1182902.22E-26278339IPR003657WRKY domain
SMARTSM007742.9E-37280340IPR003657WRKY domain
PfamPF031063.9E-26282339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MALQKRLSDM GIEEASKSAV ESCHSVLDLI SKTKDQIEYG NLSVKTEESV AKFKKVVSIL  60
DVGLGHARAR KSKNLQTPCP RNILLDNPII GINYQPTAYQ LPPTNSGDIS THGMGTNAKN  120
NFNSEKLSLE SSSSLKPTTQ IVQQTPQQSN YQFHLHPLQQ KFQQHQQLKQ PTASIFQKSN  180
STSCINLNFE KATCTPSNSM SSTRSFMSSL NGSGSATNLD GTAFRLIGET RSLDQGSYQH  240
KRSCPARGEG GRCHCSKNRK HKIRRSIKVP ATSPRLANIP GDEYSWRKYG QKPVKGSPHP  300
RAYYKCTSMR NCPARKKVER CLEEPSMLTI TYENEHNHPR MLVPNLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-162763381071WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257264NRKHKIRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282258.11e-120PREDICTED: probable WRKY transcription factor 21
RefseqXP_010651943.11e-120PREDICTED: probable WRKY transcription factor 21
RefseqXP_010651944.11e-120PREDICTED: probable WRKY transcription factor 21
TrEMBLK4EN171e-133K4EN17_PANQU; WRKY8 (Fragment)
STRINGVIT_07s0141g00680.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-57WRKY DNA-binding protein 21